What is L1Base?

L1Base (v2) is a dedicated database containing putatively active LINE-1 (L1) insertions residing in human and rodent genomes: a) intact in the two ORFs, full length L1s (FLI-L1s) and b) L1s with intact ORF2 but disrupted ORF1 (ORF2-L1s). In addition, due to their regulatory potential, the full length (>6000bp) non-intact L1s (FLnI-L1s) were also included in the database.

If you are using data stored in L1Base for your research please cite L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes Nucl. Acids Res. (2016) doi: 10.1093/nar/gkw925

Homo sapiens (Human)

NCBI38

NCBI36

NCBI35

Pan troglodytes (Chimp)

PT 2.19

Macaca mulatta (Macaque)

MMUL 1.0

Pongo abelii (Orangutan)

PPYG2

Gorilla gorilla (Gorilla)

gorGor3.1

Callithrix jacchus (Marmoset)

C_jacchus3.2.1

Chlorocebus sabaeus (Vervet)

ChlSab1.1

Papio anubis (Olive Baboon)

PapAnu2.0

Rattus norvegicus (Rat)

RGSC 6

RGSC 3.4

RGSC 3c

Felis catus (Cat)

Felis_catus_6.2

Canis familiaris (Dog)

Canis_familiaris_3.1

Bos taurus (Cow)

UMD3.1

Ovis aries (Sheep)

Ovis_aries_3.1

Equus caballus (Horse)

Equus_caballus_2

Sus scrofa (Pig)

Sus_scrofa 1.02

Oryctolagus cuniculus (European Rabbit)

Oryctolagus_cuniculus_2